#language en
#refresh 999999

= Software installed on s15.fluid.tuwien.ac.at =

Some software, for instance Mathematica, Matlab, or the Nag library
is installed locally under `/usr/local/share`.

The proprietary Dell PERC RAID Controller (LSI MegaRAID SAS)
is installed under `opt/MegaRAID/perccli`, see also `root/hdd-raid-monitoring.txt`.
Mail from 10. 11. 2015.

== Installed debian packages ==

The packages listed below were installed with `apt-get install`.
This list is kept approximately in chronological order, oldest on top.
Packages which were pulled in as dependencies appear indented to the right.

To not upgrade the kernel, use `apt-mark hold linux-image`.
Show held packages with `apt-mark showhold`.

Online information on packages can be found at
https://www.debian.org/distrib/packages.

## Indent; 4 spaces

{{{#!python
# Necessary for authentication via ldap
libpam-cap, libpam-systemd		(installed 2015-11-06)
libpam-ldapd, libnss-ldapd		(2015-11-06)
    nslcd
# then, do:
# $ pam-auth-update ldap
# $ vi /etc/nslcd; vi /etc/nsswitch
# manually add pam_mkhomedir in /etc/pam.d/common-session
# $ vi /etc/pam.d/common-session
nscd					(2015-12-02)
# $ vi /etc/nscd.conf
cifs-utils				(2015-11-09)
    libtalloc2	libwbclient0 samba-common

# For mathematica:
libxmu6					(2015-11-10)
    libice6 libsm6 libxt6 x11-common
libasound2				(2015-11-10)
    libasound2-data
# write /usr/share/Mathematica/Licensing/mathpass
# with contents !lserver.tuwien.ac.at

# For matlab:
libxtst6				(2015-11-10)

cups					(2015-11-11)
    cups-client cups-common cups-core-drivers cups-daemon cups-filters
    cups-filters-core-drivers cups-ppdc cups-server-common ghostscript
    gsfonts libcupscgi1 libcupsfilters1 libcupsimage2 libcupsmime1
    libcupsppdc1 libfontembed1 libgs9 libgs9-common libijs-0.35
    libjbig2dec0 libopenjpeg5 libpoppler46 libqpdf13 poppler-data
    poppler-utils ssl-cert
# To acces and administer cups,
# $ usermod -a -G lpadmin oswat

hplip-data				(2015-11-11)
printer-driver-hpcups			(2015-11-11)
    libhpmud0 libperl5.20 libsensors4 libsnmp-base libsnmp30
# printer-driver-postscript-hp depends on hplip.
hplip					(2015-11-11)
    libdbus-glib-1-2 libexif12 libgd3 libgphoto2-6 libgphoto2-port10
    libieee1284-3 libltdl7 libpolkit-agent-1-0 libpolkit-backend-1-0
    libpolkit-gobject-1-0 libsane libsane-common libsane-hpaio libv4l-0
    libv4lconvert0 libvpx1 libxpm4 policykit-1 python-dbus
    python-dbus-dev python-gobject-2 python-imaging python-pexpect
    python-reportlab python-reportlab-accel
printer-driver-postscript-hp		(2015-11-11)
    dh-python libmpdec2 libpython3-stdlib libpython3.4-minimal
    libpython3.4-stdlib python3 python3-minimal python3.4
    python3.4-minimal

ifenslave, ethtool			(2015-11-12)
# $ vi /etc/network/interfaces

htop, gcc, make, git, flex, bison	(2015-11-13)
binutils				(2015-11-13)
    cpp cpp-4.9 gcc-4.9 git-man libasan1 libatomic1 libbison-dev
    libcilkrts5 libcloog-isl4 liberror-perl libfl-dev
    libgcc-4.9-dev libgomp1 libisl10 libitm1 liblsan0 libmpc3
    libmpfr4 libquadmath0 libtsan0 libubsan0
openmpi-bin				(2015-11-13)
    libcr0 libgfortran3 libhwloc5 libibverbs1 libnuma1 libopenmpi1.6
    openmpi-common
libopenmpi-dev				(2015-11-13)
    libc-dev-bin libc6-dev libhwloc-dev libibverbs-dev libltdl-dev
    libnuma-dev linux-libc-dev mpi-default-dev
mercurial				(2015-11-13)
    libjs-excanvas mercurial-common
clang					(2015-11-13)
    clang-3.5 libclang-common-3.5-dev libclang1-3.5 libllvm3.5
    libobjc-4.9-dev libobjc4 libstdc++-4.9-dev
clang-format-3.5, indent		(2015-11-13)
rpm 					(2015-11-13)
    debugedit libelf1 liblua5.2-0 libnspr4 libnss3 librpm3 librpmbuild3
    librpmio3 librpmsign1 rpm-common rpm2cpio
g++					(2015-11-13)
    g++-4.9

zlib1g-dev, libiberty-dev		(2015-11-13)
joe					(2015-11-16)
gnuplot					(2015-11-16)
    aglfn gnuplot-data gnuplot-qt gnuplot-tex libaudio2 liblua5.1-0
    libmng1 libqt4-network libqt4-svg libqt4-xml libqtcore4 libqtdbus4
    libqtgui4 qtcore4-l10n

# For webdavcgi
apache2					(2015-11-16)
    apache2-bin apache2-data apache2-utils libapr1 libaprutil1
    libaprutil1-dbd-sqlite3 libaprutil1-ldap
libdbi-perl libdbd-sqlite3-perl sqlite3 libmodule-load-perl
libnet-ldap-perl libxml-simple-perl libuuid-tiny-perl
libquota-perl libarchive-zip-perl libgraphics-magick-perl
libfile-copy-link-perl libjson-perl libdatetime-perl
libmime-tools-perl libimage-exiftool-perl (2015-11-13)
    libb-hooks-endofscope-perl libclass-load-perl
    libclass-singleton-perl libconvert-asn1-perl libconvert-binhex-perl
    libdatetime-locale-perl libdatetime-timezone-perl libgraphicsmagick3
    liblist-allutils-perl liblist-moreutils-perl
    libmodule-implementation-perl libmodule-runtime-perl
    libnamespace-clean-perl libpackage-stash-perl
    libparams-classify-perl libparams-validate-perl
    libsub-exporter-progressive-perl libsub-identify-perl
    libtry-tiny-perl libvariable-magic-perl libwmf0.2-7
# Installed a perl-module,
# $ perl -MCPAN -e "install DateTime::Format::Human::Duration"
zip unzip patch				(2015-11-16)

# Install webdavcgi trunk from subversion repository
subversion				(2016-01-22)
    libserf-1-1 libsvn1
# Pimp webdavcgi with perl-integration
libapache2-mod-perl2			(2016-01-19)
    libdevel-symdump-perl
# try webdavcgi with perl and mysql database
libdbd-mysql-perl			(2016-01-29)
    libmysqlclient18 mysql-common
mysql-server				(2016-01-30)
    mysql-server-core-5.5 mysql-server-5.5 mysql-client-5.5
    libterm-readkey-perl

tree					(2015-11-17)
gfortran-4.9 libgfortran-4.9-dev	(2015-11-17)
numactl					(2015-11-17)
wakeonlan				(2015-12-10)
# $ vi /etc/ethers

libglu1-mesa				(2016-02-04)
    libxcb-dri2-0 libx11-xcb1 libgl1-mesa-glx libxcb-sync1 libxxf86vm1
    libxshmfence1
libxft-dev				(2016-02-04)
    libxft2 libfreetype6-dev libexpat1-dev libxau-dev x11proto-core-dev
    libpng12-dev xorg-sgml-doctools x11proto-input-dev libxrender-dev
    libpthread-stubs0-dev libfontconfig1-dev pkg-config

xpdf					(2016-02-12)
    libmotif-common libxm4

python-numpy				(2016-02-22)
    libblas-common libblas3 liblapack3

samba                                   (2016-04-06)
    python-crypto update-inetd python-samba libkrb5-26-heimdal
    libroken18-heimdal libwind0-heimdal python-dnspython libntdb1
    libhcrypto4-heimdal tdb-tools libheimntlm0-heimdal python-tdb
    libhdb9-heimdal libtevent0 samba-dsdb-modules samba-common-bin
    libldb1 libasn1-8-heimdal libtdb1 libfile-copy-recursive-perl
    samba-libs libpython2.7 libkdc2-heimdal libheimbase1-heimdal
    python-talloc libgssapi3-heimdal python-ldb libhx509-5-heimdal
    python-ntdb

libboost-thread-dev			(2016-06-16)
    libboost-date-time1.55.0 libboost-system1.55.0 libboost-thread-dev
    libboost-chrono1.55.0d libboost-chrono1.55-dev
    libboost-system1.55-dev libboost-atomic1.55-dev libboost1.55-dev
    libboost-serialization1.55.0 libboost-date-time1.55-dev
    libboost-thread1.55.0 libboost-atomic1.55.0
    libboost-serialization1.55-dev libboost-thread1.55-dev
cmake					(2016-06-16)
    libarchive13 liblzo2-2 libcurl3 cmake-data
libgmp-dev				(2016-06-16)
    libgmpxx4ldbl
libmpfr-dev				(2016-06-16)

inotify-tools				(2016-06-24)
    libinotifytools0

dosfstools				(2016-07-05)

# For nek5000
mesa-utils tcsh mpich libmpich-dev xfonts-100dpi
xfonts-100dpi-transcoded xfonts-75dpi
xfonts-75dpi-transcoded			(2016-08-01)
    hwloc-nox libcr-dev libfontenc1 libglew1.10 libmpich12 libmpl-dev
    libmpl1 libopa-dev libopa1 libxfont1 xfonts-encodings xfonts-utils
libxt-dev				(2016-08-03)
    libice-dev libsm-dev

zsh mc tmux				(2016-09-14)
    mc-data zsh-common
etckeeper emacs24-nox mg screen		(2016-09-14)
    emacsen-common emacs24-bin-common emacs24-common
obnam (jessie-backports)		(2016-09-14 - removed 2016-10-10)
    fuse python-ttystatus python-tracing python-ecdsa python-cliapp
    python-paramiko python-larch python-fuse libyaml-0-2 python-yaml
borgbackup (jessie-backports)		(2016-09-26)
    python3-msgpack python3-pkg-resources liblz4-1
iotop python3-llfuse			(2016-09-26)
iftop					(2016-09-26)
    libpcap0.8
munin					(2017-01-16)
    libdbi1 fonts-dejavu librrd4 fonts-dejavu-extra liblog-log4perl-perl
    libdate-manip-perl libhtml-template-perl libio-socket-inet6-perl
    libsocket6-perl munin-common rrdtool librrds-perl
libapache2-mod-fcgid			(2017-01-16)
munin-node				(2017-01-16)
    gawk munin-node libio-multiplex-perl munin-plugins-core
    libnet-cidr-perl libnet-server-perl
libmath-round-perl			(2017-01-25)
libgsl0-dev				(2017-01-31)
    libgsl0ldbl

# For Netgen/NGSolve
libpython3-dev libxmu-dev tk-dev tcl-dev (2017-06-27)
    dpkg-dev libdpkg-perl libpython3.4 libpython3.4-dev libtcl8.6 libtk8.6
    libxext-dev libxmu-headers libxss-dev libxss1 tcl tcl8.6 tcl8.6-dev
    tk tk8.6 tk8.6-dev x11proto-scrnsaver-dev x11proto-xext-dev
libglu1-mesa-dev			(2017-06-27)
libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libgl1-mesa-dev
    libpciaccess0 libx11-xcb-dev libxcb-dri2-0-dev libxcb-dri3-dev
    libxcb-glx0-dev libxcb-present-dev libxcb-randr0 libxcb-randr0-dev
    libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-sync-dev
    libxcb-xfixes0 libxcb-xfixes0-dev libxdamage-dev libxfixes-dev
    libxshmfence-dev libxxf86vm-dev mesa-common-dev x11proto-damage-dev
    x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev
    x11proto-xf86vidmode-dev
i965-va-driver libgl1-mesa-dri		(2017-06-27)
    libva1

python-matplotlib			(2017-07-20)
    fonts-lyx libjs-jquery libjs-jquery-ui python-dateutil
    python-matplotlib-data python-mock python-nose python-pyparsing python-tz
python-tk octave			(2017-09-27)
    blt libaec0 libamd2 libarpack2 libaudio2 libcamd2 libccolamd2
    libcholmod3 libcolamd2 libcxsparse3 libfftw3-single3 libflac8
    libfltk-gl1.3 libfltk1.3 libgl2ps1 libglpk40 libgraphicsmagick++-q16-12
    libhdf5-100 libjack-jackd2-0 libmetis5 libmng1 liboctave3v5 libogg0
    libopus0 libosmesa6 libportaudio2 libqhull7 libqrupdate1
    libqscintilla2-12v5 libqscintilla2-l10n libqt4-network libqt4-opengl
    libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libsamplerate0 libsndfile1
    libsuitesparseconfig4 libsz2 libumfpack5 libvorbis0a libvorbisenc2
    octave-common qtcore4-l10n tk8.6-blt2.5
python-joblib libhdf5-dev libhdf5-mpi-dev hdf5-tools hdfview (2017-09-27)
    adwaita-icon-theme ca-certificates-java dconf-gsettings-backend
    dconf-service default-jre default-jre-headless glib-networking
    glib-networking-common glib-networking-services
    gsettings-desktop-schemas hdf5-helpers java-common java-wrappers
    libaec-dev libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java
    libatk-wrapper-java-jni libatspi2.0-0 libcairo-gobject2 libcolord2
    libdconf1 libepoxy0 libgif7 libgtk-3-0 libgtk-3-common libhdf4-0
    libhdf5-cpp-100 libhdf5-openmpi-100 libhdf5-openmpi-dev libjgraph-java
    libjhdf4-java libjhdf4-jni libjhdf5-java libjhdf5-jni libjpeg-dev
    libjpeg62-turbo-dev libjson-glib-1.0-0 libjson-glib-1.0-common
    libpcsclite1 libpulse0 librest-0.7-0 libslf4j-java libsoup-gnome2.4-1
    libsoup2.4-1 libwayland-cursor0 libwayland-egl1-mesa libxaw7 libxv1
    libxxf86dga1 openjdk-8-jre openjdk-8-jre-headless x11-utils
python-h5py				(2017-09-29)
ffmpeg					(2017-10-02)
    libass5 libavc1394-0 libavcodec57 libavdevice57 libavfilter6 libavformat57
    libavresample3 libavutil55 libbluray1 libbs2b0 libcaca0 libcdio-cdda1
    libcdio-paranoia1 libcdio13 libchromaprint1 libcrystalhd3 libdc1394-22
    libebur128-1 libflite1 libfribidi0 libgme0 libgsm1 libiec61883-0 libmp3lame0
    libmpg123-0 libopenal-data libopenal1 libopencv-core2.4v5
    libopencv-imgproc2.4v5 libopenmpt0 libpgm-5.2-0 libpostproc54 libraw1394-11
    librubberband2 libsdl2-2.0-0 libshine3 libsnappy1v5 libsndio6.1 libsodium18
    libsoxr0 libspeex1 libssh-gcrypt-4 libswresample2 libswscale4 libtbb2
    libtheora0 libtwolame0 libva-drm1 libva-x11-1 libvdpau1 libvorbisfile3
    libvpx4 libwavpack1 libx264-148 libx265-95 libxvidcore4 libzmq5
    libzvbi-common libzvbi0
python-scipy				(2017-10-11)
    python-decorator
autoconf autoconf-archive automake autoconf-doc	(2018-01-12)
    autotools-dev
valgrind				(2018-01-12)
    libc6-dbg
libopenblas-dev				(2018-01-24)
    libblas-dev libopenblas-base
libdatetime-format-human-duration-perl	(2020-02-12)
tftpd-hpa				(2020-02-18)
ldap-utils				(2020-05-04)
nmap					(2020-07-02)
    liblinear3 nmap-common
netpbm					(2020-12-06)
    libnetpbm10
bonnie++				(2021-05-20)
lldb					(2022-03-04)
    libffi-dev liblldb-11 libncurses-dev libpfm4 libtinfo-dev libyaml-0-2
    libz3-dev lldb-11 llvm-11 llvm-11-dev llvm-11-runtime llvm-11-tools
    python3-lldb-11 python3-pygments python3-yaml
gdb					(2022-03-04)
    libbabeltrace1 libboost-regex1.74.0 libdebuginfod1 libipt2
    libsource-highlight-common libsource-highlight4v5
systemd-coredump			(2022-03-04)
lzop					(2022-03-14)
    liblzo2-2
}}}